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bbduk program  (Illumina Inc)


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    Structured Review

    Illumina Inc bbduk program
    Bbduk Program, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bbduk+program/bbduk+module/bio_rxiv__2024__12__26__630446-212-14-1
    Average 90 stars, based on 1 article reviews
    bbduk program - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    other:

    Article Title: Delineation of the Genera Haemoproteus and Plasmodium Using RNA-Seq and Multi-gene Phylogenetics
    Article Snippet: The BBDUK program removed 84,000 reads as Illumina adapter sequences (0.00038% of total reads).

    Sequencing:

    Article Title: Clonal expansion from standing genetic variation underpins the evolution of an emerging plant pathogen in Australia
    Article Snippet: Heat-denatured libraries were sequenced at molecular laboratories of the University of Southern Queensland, on an Illumina MiSeq platform using a 600-cycle paired-end V3 reagent kits (Illumina). .. Raw Illumina data for all DNA samples ( n = 130) were filtered using BBduk program from BBTools version 1.0 ( ) to remove adapter sequences ( ktrim = r, k = 23, mink = 11, hdist = 1, minlen = 50, ftm = 5 tpe tbo ), low-quality nucleotides ( qtrim = r, trimq=10, minlen=50, maq=10 tpe ) and common sequence contaminants based on the NCBI Univec database ( k = 31, hdist = 1 ). ..



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